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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1801
ChIP-seq
1527
total RNA-seq
492
ATAC-seq
316
single cell RNA-seq
203
DNase-seq
87
RNA microarray
63
snATAC-seq
57
pCHi-C
34
Hi-C
27
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
27
DNA methylation
Date released
12
July, 2019
9
August, 2017
November, 2018
6
February, 2021
Available data
zippedFastqFolder
11
bam
10
bed bedMethyl
10
bigBed bedMethyl
10
bigWig
10
fastq
6
tsv
Organism
27
Homo sapiens
Biosample type
21
tissue
6
primary cell
Organ
8
heart
6
adipose tissue
6
connective tissue
6
epithelium
6
pancreas
4
liver
2
blood vessel
2
vasculature
1
limb
1
musculature of body
Project
21
AMP
6
HPAP
Genome assembly (visualization)
10
GRCh38
Lab
21
AMP-T2D consortium
6
Klaus Kaestner, Upenn
assay_slims!
DNA sequencing
files.file_type!
zippedFastqFolder
month_released!
November, 2018
BIOSAMPLE
ASSAY
27 results
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WGBS
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 5 more…
primary cell
pancreatic alpha cell
6
See all biosamples
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