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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1610
ChIP-seq
1057
total RNA-seq
303
ATAC-seq
204
DNase-seq
183
single cell RNA-seq
86
RNA microarray
67
snATAC-seq
56
pCHi-C
24
WGBS
23
Hi-C
19
RRBS
16
small RNA-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
183
Transcription
Target of assay
3
control
Date released
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
11
July, 2018
10
April, 2018
9
April, 2020
3
December, 2019
3
July, 2019
3
May, 2023
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
59
fastq
52
zippedFastqFolder
33
tsv
26
bam
26
bigWig
8
csv
5
txt
Organism
183
Homo sapiens
Biosample type
113
primary cell
68
tissue
2
in vitro differentiated cells
Organ
pancreas
70
epithelium
56
kidney
9
lung
4
connective tissue
3
brain
1
heart
1
liver
1
musculature of body
Project
85
HPAP
47
KPMP
42
AMP
9
LungMap
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
85
Klaus Kaestner, Upenn
47
KPMP
39
AMP-T2D consortium
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
7
audit script error
4
inconsistent ontology term
assay_slims!
DNA sequencing
month_released!
August, 2021
organ_slims!
pancreas
BIOSAMPLE
ASSAY
183 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic cell
9
mesenchymal cell
6
cerebellar granule cell
2
endothelial cell
2
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tissue
kidney
56
lung
9
heart
1
liver
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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