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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
34
single cell RNA-seq
26
total RNA-seq
21
snATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
64
Transcription
60
DNA accessibility
41
DNA methylation
1
3D chromatin structure
Date released
258
August, 2021
161
May, 2022
160
February, 2023
141
February, 2021
135
August, 2017
122
November, 2017
97
October, 2019
81
May, 2020
78
May, 2021
59
September, 2020
47
September, 2023
35
May, 2024
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
14
April, 2019
14
May, 2023
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
134
zippedFastqFolder
6
bam
6
fastq
6
txt
1
hic
Organism
162
Homo sapiens
Biosample type
135
primary cell
27
tissue
2
cell line
2
stem cell
Organ
86
pancreas
80
epithelium
20
liver
1
musculature of body
Project
134
HPAP
27
AMP
4
community
1
ITG
Genome assembly (visualization)
hg19
1
GRCh38
Lab
134
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
AMP-T2D consortium
1
ITG
assay_slims!
DNA sequencing
assembly!
hg19
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
166 results
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Clear Filters
WGBS
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
chondrocytes
1
tissue
liver
20
islet of Langerhans
6
skeletal muscle tissue
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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