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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
22
ATAC-seq
8
DNase-seq
Assay category
59
DNA binding
30
DNA accessibility
Target of assay
49
histone
49
histone modification
30
broad histone mark
19
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
40
October, 2018
16
August, 2017
14
September, 2018
7
October, 2019
5
September, 2017
4
June, 2019
2
November, 2018
1
May, 2019
Available data
621
bam
611
bigWig
406
tsv
357
fastq
188
bed narrowPeak
89
bigBed narrowPeak
29
bed bed3+
14
bed broadPeak
8
tagAlign
7
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
1
hdf5
Organism
83
Homo sapiens
Biosample type
60
tissue
22
primary cell
7
cell line
Organ
320
liver
126
brain
103
kidney
94
heart
89
pancreas
83
limb
82
vasculature
78
blood vessel
75
epithelium
54
blood
54
bodily fluid
46
musculature of body
26
nerve
25
artery
25
connective tissue
18
ureter
13
spleen
12
vein
9
adipose tissue
6
eye
Project
89
AMP
Genome assembly (visualization)
89
GRCh38
89
hg19
Lab
89
AMP-T2D consortium
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA sequencing
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
tissue
body of pancreas
26
4
pancreas
13
2
endocrine pancreas
14
islet of Langerhans
1
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
Panc1
6
1
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