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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
171
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
168
histone
168
histone modification
107
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
78
October, 2019
63
November, 2017
30
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
215
bam
214
bigWig
201
bed narrowPeak
126
bigBed narrowPeak
82
tagAlign
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
15
fastq
12
tsv
1
tagAlign bed3+
Organism
217
Homo sapiens
Biosample type
203
tissue
14
primary cell
Organ
635
pancreas
566
connective tissue
525
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
217
AMP
Genome assembly (visualization)
217
GRCh38
164
hg19
Lab
217
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_slims!
DNA sequencing
audit.WARNING.category!
inconsistent control run_type
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
217 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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