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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
65
total RNA-seq
25
DNase-seq
12
ATAC-seq
3
Hi-C
1
RRBS
1
small RNA-seq
Assay category
71
DNA binding
66
Transcription
37
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
11
transcription factor
5
RNA binding protein
Date released
64
February, 2021
47
April, 2019
25
June, 2019
15
May, 2019
12
July, 2019
8
October, 2019
4
March, 2020
3
May, 2021
Available data
173
bam
166
bigWig
108
bed narrowPeak
86
bigBed narrowPeak
66
tsv
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
4
tagAlign
3
bedpe bed3+
3
hic
1
bed bedMethyl
1
bigBed bedMethyl
Organism
178
Homo sapiens
Biosample type
113
tissue
64
cell line
primary cell
1
in vitro differentiated cells
Organ
612
liver
555
connective tissue
473
pancreas
424
adipose tissue
178
heart
143
brain
134
blood vessel
134
vasculature
104
kidney
96
limb
91
artery
84
epithelium
70
bone element
61
musculature of body
55
blood
55
bodily fluid
31
nerve
30
eye
29
embryo
18
ureter
14
spleen
12
skeleton
1
pericardium
1
pituitary gland
Project
178
AMP
Genome assembly (visualization)
256
GRCh38
178
hg19
Lab
178
AMP-T2D consortium
assay_slims!
DNA sequencing
biosample_type!
primary cell
organ_slims!
small intestine
BIOSAMPLE
ASSAY
178 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
29
3
3
2
1
1
heart
12
4
16
1
1
heart right ventricle
11
1
1
1
right atrium auricular region
7
2
2
1
coronary artery
3
2
1
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
4
52
8
in vitro differentiated cells
cardiac fibroblast
1
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