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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ATAC-seq
29
ChIP-seq
15
total RNA-seq
2
Capture-C
2
Hi-C
1
snATAC-seq
Assay category
33
DNA accessibility
29
DNA binding
15
Transcription
2
3D chromatin structure
Target of assay
18
histone
18
histone modification
11
narrow histone mark
11
transcription factor
7
broad histone mark
1
RNA binding protein
Date released
548
February, 2021
281
November, 2017
273
May, 2021
260
May, 2020
209
October, 2019
185
June, 2019
117
August, 2017
96
May, 2019
85
July, 2019
77
December, 2017
68
November, 2018
65
April, 2019
60
August, 2021
45
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
21
March, 2020
21
May, 2022
11
July, 2018
10
April, 2018
8
October, 2017
6
November, 2019
6
November, 2020
5
December, 2019
5
October, 2018
3
January, 2018
2
June, 2018
1
May, 2023
Available data
66
bigWig
61
bed narrowPeak
40
bam
15
tagAlign
15
tsv
6
bed bed3+
2
hic
1
bedpe bed3+
1
txt
Organism
81
Homo sapiens
Biosample type
33
in vitro differentiated cells
23
cell line
22
tissue
3
primary cell
Organ
38
liver
pancreas
8
embryo
4
connective tissue
3
epithelium
1
kidney
1
musculature of body
Project
81
AMP
Genome assembly (visualization)
105
GRCh38
81
hg19
Lab
41
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
assay_slims!
DNA sequencing
organ_slims!
pancreas
BIOSAMPLE
ASSAY
81 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
Capture-C
Hi-C
snATAC-seq
in vitro differentiated cells
neural progenitor cell
10
12
7
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
14
1
H1-hESC
8
tissue
liver
20
kidney
1
skeletal muscle tissue
1
primary cell
hepatocyte
3
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