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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
10
ATAC-seq
5
ChIP-seq
4
DNase-seq
Assay category
54
Transcription
14
DNA accessibility
5
DNA binding
Target of assay
histone
histone modification
14
broad histone mark
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
3
July, 2019
3
October, 2019
2
June, 2019
1
May, 2019
Available data
73
bam
65
bigWig
54
tsv
19
bed narrowPeak
5
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
73
Homo sapiens
Biosample type
64
cell line
7
tissue
2
primary cell
Organ
554
connective tissue
542
liver
516
pancreas
424
adipose tissue
221
epithelium
126
heart
99
kidney
97
vasculature
92
blood vessel
73
artery
70
bone element
54
blood
54
bodily fluid
48
limb
47
brain
46
musculature of body
33
eye
18
embryo
18
ureter
12
skeleton
8
spleen
7
nerve
5
vein
2
pericardium
Project
73
AMP
Genome assembly (visualization)
108
GRCh38
73
hg19
Lab
73
AMP-T2D consortium
assay_slims!
DNA sequencing
target.investigated_as!
histone
histone modification
BIOSAMPLE
ASSAY
73 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
8
4
tissue
coronary artery
1
1
2
tibial artery
1
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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