Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
408
ChIP-seq
109
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
4
Hi-C
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
408
DNA binding
111
Transcription
30
DNA accessibility
4
3D chromatin structure
1
DNA methylation
DNA sequencing
Target of assay
353
transcription factor
82
recombinant protein
80
control
RNA binding protein
38
histone
38
histone modification
29
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
281
November, 2017
96
February, 2021
40
August, 2021
40
November, 2018
25
December, 2018
21
May, 2021
17
January, 2019
15
November, 2019
15
October, 2019
9
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
502
bam
446
bigWig
363
fastq
332
bed narrowPeak
292
bigBed narrowPeak
113
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
Organism
572
Homo sapiens
Biosample type
2424
tissue
1044
primary cell
576
cell line
383
in vitro differentiated cells
10
stem cell
Organ
346
liver
91
pancreas
78
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
50
blood
50
bodily fluid
kidney
8
embryo
1
mammary gland
Project
565
AMP
9
T1D
2
community
Genome assembly (visualization)
455
hg19
393
GRCh38
Lab
533
AMP-T2D consortium
30
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
76
inconsistent ontology term
inconsistent control
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
20
inconsistent control read length
5
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA sequencing
audit.ERROR.category!
inconsistent control
organ_slims!
kidney
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
576 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
Hi-C
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
cell line
HepG2
324
14
1
2
2
2
1
EndoC_BH1
14
33
19
6
1
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
49
1
Panc1
13
1
1
+ See 8 more…
See all biosamples
Download