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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
Assay category
61
DNA binding
Target of assay
40
histone
40
histone modification
21
transcription factor
20
broad histone mark
20
narrow histone mark
6
chromatin remodeller
3
RNA binding protein
Date released
32
September, 2018
14
August, 2017
10
November, 2017
3
October, 2017
2
November, 2018
Available data
89
fastq
88
bam
86
bigWig
48
bed narrowPeak
15
bigBed narrowPeak
14
bed bed3+
4
tagAlign
2
bed broadPeak
0
bed bedMethyl
Organism
61
Homo sapiens
Biosample type
32
primary cell
17
tissue
12
cell line
Organ
42
pancreas
21
epithelium
12
liver
4
adipose tissue
4
connective tissue
3
brain
Project
61
AMP
Genome assembly (visualization)
61
hg19
54
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
61
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
primary cell
pancreatic ductal cell
13
pancreatic endocrine cell
11
pancreatic acinar cell
8
tissue
islet of Langerhans
10
white adipose tissue
4
brain
3
cell line
HepG2
12
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