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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
33
Transcription
19
DNA accessibility
3
DNA binding
1
3D chromatin structure
Target of assay
12
histone
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
20
May, 2021
6
February, 2023
6
November, 2019
6
November, 2020
4
March, 2020
2
August, 2021
Available data
37
bam
36
bigWig
34
tsv
2
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
69
Homo sapiens
Biosample type
70
cell line
Organ
65
epithelium
65
pancreas
Project
63
AMP
7
T1D
Genome assembly (visualization)
38
hg19
35
GRCh38
Lab
59
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
64
inconsistent ontology term
assay_slims!
DNA sequencing
audit.WARNING.category!
inconsistent control read length
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
70 results
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total RNA-seq
ATAC-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
33
19
6
3
3
2
2
1
1
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