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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
42
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
76
DNA binding
43
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
105
histone
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
32
May, 2021
25
August, 2017
21
August, 2021
16
February, 2023
15
December, 2017
8
February, 2018
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
4
March, 2020
1
August, 2018
Available data
202
bam
171
bigWig
tsv
66
fastq
44
bed narrowPeak
14
tagAlign
13
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
141
Homo sapiens
Biosample type
1073
tissue
581
primary cell
489
cell line
141
in vitro differentiated cells
4
stem cell
Organ
49
connective tissue
10
embryo
7
epithelium
3
liver
2
pancreas
1
adipose tissue
Project
141
AMP
Genome assembly (visualization)
83
hg19
50
GRCh38
4
hg18
Lab
107
AMP-T2D consortium
27
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
23
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
inconsistent control read length
assay_slims!
DNA sequencing
audit.WARNING.category!
inconsistent control read length
files.file_type!
tsv
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
141 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
24
8
1
1
1
embryonic stem cell
18
6
5
neural progenitor cell
7
10
pancreatic endoderm
7
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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