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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
136
total RNA-seq
42
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
180
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
chromatin remodeller
Date released
132
May, 2021
62
August, 2017
42
August, 2021
37
February, 2018
33
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
Available data
273
bam
241
bigWig
131
tsv
122
fastq
114
bed narrowPeak
40
tagAlign
17
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
375
Homo sapiens
Biosample type
2281
tissue
1080
primary cell
616
cell line
375
in vitro differentiated cells
8
stem cell
Organ
91
connective tissue
26
embryo
22
epithelium
14
liver
3
pancreas
adipose tissue
1
heart
Project
375
AMP
Genome assembly (visualization)
279
hg19
247
GRCh38
4
hg18
Lab
321
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
assay_slims!
DNA sequencing
audit.WARNING.category!
inconsistent control read length
organ_slims!
adipose tissue
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
375 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
61
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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