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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
3
Hi-C
Assay category
12
DNA accessibility
3
3D chromatin structure
Date released
10
February, 2023
3
October, 2022
2
February, 2021
Available data
3059
bam
2810
bigWig
1630
bed narrowPeak
1427
tsv
1302
fastq
1011
bigBed narrowPeak
309
bed broadPeak
297
tagAlign
272
bigBed broadPeak
261
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
15
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
4
primary cell
1
cell line
Organ
6
connective tissue
4
bone element
4
skeleton
3
epithelium
3
pancreas
1
brain
1
liver
Project
12
AMP
3
HPAP
Genome assembly (visualization)
15
hg19
2
GRCh38
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent replicate
assay_slims!
DNA sequencing
audit.WARNING.category!
inconsistent control read length
month_released!
May, 2021
BIOSAMPLE
ASSAY
15 results
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ATAC-seq
Hi-C
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
primary cell
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
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