Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
34
ChIP-seq
24
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
205
DNA accessibility
34
DNA binding
24
3D chromatin structure
2
Transcription
Target of assay
17
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
187
June, 2019
26
August, 2017
10
October, 2019
9
November, 2018
8
March, 2020
5
August, 2021
4
July, 2019
3
December, 2017
3
October, 2022
2
February, 2021
2
May, 2021
2
November, 2019
2
September, 2017
1
March, 2019
1
March, 2023
1
May, 2022
1
November, 2020
Available data
3101
bam
2910
bigWig
1685
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
Organism
267
Homo sapiens
Biosample type
216
tissue
43
primary cell
in vitro differentiated cells
5
cell line
3
stem cell
Organ
79
kidney
36
limb
36
musculature of body
36
pancreas
35
brain
33
heart
27
epithelium
18
ureter
16
vasculature
15
liver
14
blood vessel
14
connective tissue
6
adipose tissue
4
artery
4
eye
4
vein
2
nerve
1
spleen
Project
263
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
243
hg19
240
GRCh38
Lab
258
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
2
Kyle Gaulton, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
audit script error
5
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA sequencing
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
267 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
21
2
heart
18
1
muscle of arm
17
brain
14
kidney
13
1
+ See 44 more…
primary cell
endothelial cell of umbilical vein
2
2
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
+ See 23 more…
cell line
HepG2
1
1
Panc1
1
1
EndoC_BH1
1
stem cell
hESC
3
See all biosamples
Download