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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
11
ATAC-seq
8
WGBS
4
RRBS
1
ChIP-seq
1
GRO-seq
1
Hi-C
Assay category
128
Transcription
38
DNA accessibility
12
DNA methylation
1
3D chromatin structure
1
DNA binding
Target of assay
1
broad histone mark
1
histone
1
histone modification
Date released
76
February, 2023
45
February, 2021
41
September, 2020
7
August, 2020
6
August, 2017
2
October, 2017
1
December, 2018
1
January, 2018
November, 2017
1
November, 2018
1
September, 2018
Available data
bam
2576
bigWig
1469
tsv
1372
bed narrowPeak
893
fastq
713
bigBed narrowPeak
280
tagAlign
251
bed broadPeak
248
bed bed3+
220
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
181
Homo sapiens
Biosample type
172
primary cell
7
tissue
in vitro differentiated cells
1
cell line
1
stem cell
Organ
70
pancreas
69
epithelium
3
liver
2
musculature of body
1
adipose tissue
1
brain
1
connective tissue
Project
169
HPAP
12
AMP
Genome assembly (visualization)
11
GRCh38
5
hg19
1
hg18
Lab
169
Klaus Kaestner, Upenn
11
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
audit script error
Audit category:
1
missing controlled_by
assay_slims!
DNA sequencing
biosample_type!
in vitro differentiated cells
files.file_type!
bam
month_released!
November, 2017
BIOSAMPLE
ASSAY
181 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
RRBS
ChIP-seq
GRO-seq
Hi-C
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
7
6
exocrine cell
39
pancreatic beta cell
11
3
pancreatic cell
2
+ See 1 more…
tissue
liver
1
1
skeletal muscle tissue
2
adipose tissue
1
brain
1
islet of Langerhans
1
cell line
HepG2
1
stem cell
hESC
1
See all biosamples
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