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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
656
ChIP-seq
153
DNase-seq
5
ATAC-seq
3
FAIRE-seq
Assay category
656
DNA binding
161
DNA accessibility
Target of assay
395
transcription factor
256
histone
256
histone modification
163
broad histone mark
93
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
249
November, 2017
138
June, 2019
71
November, 2018
68
May, 2019
64
April, 2019
57
October, 2019
50
December, 2017
45
October, 2018
30
December, 2018
23
August, 2017
21
January, 2019
1
July, 2019
Available data
2557
bam
2354
bigWig
1330
bed narrowPeak
1307
tsv
937
fastq
817
bigBed narrowPeak
237
bed broadPeak
209
bed bed3+
209
bigBed broadPeak
180
tagAlign
161
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
19
bedpe bed3+
17
hic
10
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
Organism
811
Homo sapiens
Biosample type
445
tissue
355
cell line
primary cell
17
in vitro differentiated cells
Organ
356
liver
brain
88
heart
88
kidney
84
limb
69
pancreas
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
13
spleen
10
adipose tissue
3
eye
Project
817
AMP
Genome assembly (visualization)
807
hg19
778
GRCh38
Lab
817
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA sequencing
biosample_type!
primary cell
month_released!
May, 2023
organ_slims!
brain
BIOSAMPLE
ASSAY
817 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 34 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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