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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
DNase-seq
1
WGBS
Assay category
378
DNA binding
14
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA methylation
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
30
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
June, 2019
1
May, 2020
Available data
367
bam
367
fastq
333
bigWig
309
bed narrowPeak
294
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
401
Homo sapiens
Biosample type
400
cell line
tissue
1
primary cell
Organ
epithelium
441
pancreas
429
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
401
AMP
Genome assembly (visualization)
331
hg19
269
GRCh38
Lab
371
AMP-T2D consortium
30
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA sequencing
biosample_type!
tissue
files.file_type!
ibed
organ_slims!
epithelium
BIOSAMPLE
ASSAY
401 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
378
14
2
2
2
1
1
primary cell
hepatic stellate cell
1
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