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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
Assay category
140
DNA binding
Target of assay
115
histone
115
histone modification
60
broad histone mark
55
narrow histone mark
16
control
9
transcription factor
Date released
90
May, 2021
24
August, 2021
15
August, 2017
8
February, 2021
3
November, 2017
Available data
1485
bam
1397
bigWig
981
fastq
833
bed narrowPeak
524
tsv
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
Organism
140
Homo sapiens
Biosample type
tissue
89
primary cell
40
in vitro differentiated cells
11
cell line
Organ
14
connective tissue
7
epithelium
7
liver
6
artery
6
blood vessel
6
heart
6
vasculature
3
pancreas
Project
84
T1D
56
AMP
Genome assembly (visualization)
113
hg19
110
GRCh38
Lab
84
Kyle Gaulton, UCSD
56
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
assay_slims!
DNA sequencing
biosample_type!
tissue
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
140 results
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Clear Filters
ChIP-seq
primary cell
monocyte
84
hepatocyte
4
skeletal muscle myoblast
1
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
smooth muscle cell of the coronary artery
6
HepG2
3
iPSC derived cell line
2
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