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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
16
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
Assay category
43
DNA binding
16
Transcription
12
DNA accessibility
1
3D chromatin structure
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
357
May, 2021
321
November, 2017
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
104
February, 2021
81
August, 2021
73
September, 2018
62
November, 2018
59
September, 2020
53
June, 2019
51
October, 2019
48
July, 2018
43
April, 2018
33
December, 2017
28
December, 2018
27
July, 2019
26
February, 2018
23
January, 2019
23
March, 2020
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
5
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
42
bed narrowPeak
41
bam
39
bigWig
24
tagAlign
16
tsv
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
81
Homo sapiens
Biosample type
tissue
42
in vitro differentiated cells
35
cell line
4
primary cell
Organ
34
liver
embryo
6
epithelium
4
connective tissue
2
kidney
2
pancreas
Project
81
AMP
Genome assembly (visualization)
51
hg19
33
GRCh38
Lab
44
AMP-T2D consortium
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA sequencing
biosample_type!
tissue
organ_slims!
blood vessel
embryo
BIOSAMPLE
ASSAY
81 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
9
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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