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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
413
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
GRO-seq
1
Hi-C
1
WGBS
Assay category
413
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
39
histone
39
histone modification
30
chromatin remodeller
20
narrow histone mark
19
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
2
December, 2017
2
January, 2018
Available data
585
bam
525
bigWig
431
fastq
406
bed narrowPeak
355
bigBed narrowPeak
123
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
6
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
Organism
525
Homo sapiens
Biosample type
1772
tissue
613
primary cell
522
cell line
259
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
55
blood
55
bodily fluid
50
epithelium
12
kidney
8
embryo
Project
521
AMP
4
T1D
Genome assembly (visualization)
519
hg19
456
GRCh38
1
hg18
Lab
511
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
28
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA sequencing
organ_slims!
skeleton
BIOSAMPLE
ASSAY
525 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
GRO-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
H1-hESC
8
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stem cell
hESC
2
1
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