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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
30
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
75
DNA binding
30
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
30
control
19
broad histone mark
14
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
43
May, 2021
20
August, 2017
20
August, 2021
13
February, 2023
6
March, 2020
5
February, 2018
5
November, 2019
4
December, 2017
4
February, 2021
4
October, 2019
2
December, 2019
1
August, 2018
Available data
263
bam
bigWig
125
tsv
118
bed narrowPeak
114
fastq
40
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
127
Homo sapiens
Biosample type
990
tissue
475
primary cell
139
cell line
127
in vitro differentiated cells
7
stem cell
Organ
40
connective tissue
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
127
AMP
Genome assembly (visualization)
42
hg19
21
GRCh38
Lab
83
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
20
inconsistent ontology term
2
audit script error
assay_slims!
DNA sequencing
files.file_type!
bigWig
month_released!
April, 2019
organ_slims!
embryo
BIOSAMPLE
ASSAY
127 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
20
5
1
1
neural progenitor cell
8
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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