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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
47
WGBS
44
ChIP-seq
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
pCHi-C
Assay category
381
Transcription
219
DNA accessibility
57
DNA methylation
44
DNA binding
10
3D chromatin structure
Target of assay
32
control
15
histone
15
histone modification
9
narrow histone mark
6
broad histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
11
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
460
bam
442
bigWig
409
fastq
218
tsv
bed narrowPeak
153
zippedFastqFolder
109
bigBed narrowPeak
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
712
Homo sapiens
Biosample type
1751
tissue
712
primary cell
231
cell line
135
in vitro differentiated cells
8
stem cell
Organ
298
epithelium
278
pancreas
21
connective tissue
14
kidney
14
vasculature
12
blood vessel
10
brain
8
blood
8
bodily fluid
8
liver
7
heart
7
vein
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
334
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
281
hg19
223
GRCh38
Lab
334
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
28
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
DNA sequencing
files.file_type!
bed broadPeak
bed narrowPeak
month_released!
May, 2021
BIOSAMPLE
ASSAY
712 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
RRBS
DNase-seq
small RNA-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
31
6
1
pancreatic beta cell
21
12
16
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
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