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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
22
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
29
DNA binding
24
DNA accessibility
Target of assay
25
histone
25
histone modification
14
narrow histone mark
11
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
14
June, 2019
14
September, 2018
11
October, 2019
5
August, 2017
5
September, 2017
4
May, 2019
Available data
581
bigWig
573
bam
406
fastq
278
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
53
Homo sapiens
Biosample type
377
tissue
302
cell line
53
primary cell
14
in vitro differentiated cells
Organ
41
epithelium
22
pancreas
11
blood vessel
11
vasculature
11
vein
connective tissue
8
musculature of body
6
kidney
3
heart
2
eye
Project
53
AMP
Genome assembly (visualization)
53
hg19
51
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
DNA sequencing
files.file_type!
bigBed broadPeak
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
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