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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
232
ChIP-seq
161
ATAC-seq
151
single cell RNA-seq
35
snATAC-seq
29
DNase-seq
17
pCHi-C
10
RRBS
8
Hi-C
6
WGBS
2
small RNA-seq
1
DNAme array
Assay category
400
Transcription
232
DNA binding
225
DNA accessibility
17
DNA methylation
8
3D chromatin structure
Target of assay
222
histone
222
histone modification
113
broad histone mark
109
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
47
June, 2019
46
August, 2017
43
April, 2018
28
July, 2019
12
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
588
bigWig
559
bam
393
fastq
282
bed narrowPeak
267
tsv
98
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
899
Homo sapiens
Biosample type
2524
tissue
899
primary cell
578
cell line
357
in vitro differentiated cells
9
stem cell
Organ
305
epithelium
254
pancreas
36
connective tissue
33
kidney
33
vasculature
28
blood vessel
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
504
AMP
204
T1D
190
HPAP
1
ITG
Genome assembly (visualization)
601
hg19
521
GRCh38
Lab
472
AMP-T2D consortium
236
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
1
ITG
Audit category:
49
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA sequencing
month_released!
May, 2022
organ_slims!
vein
target.investigated_as!
control
BIOSAMPLE
ASSAY
899 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
7
13
12
1
6
Langerhans cell
52
27
pancreatic beta cell
21
7
10
12
1
exocrine cell
39
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