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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ATAC-seq
174
single cell RNA-seq
148
ChIP-seq
127
total RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
16
Hi-C
11
RRBS
6
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
301
Transcription
217
DNA accessibility
148
DNA binding
17
DNA methylation
16
3D chromatin structure
Target of assay
130
histone
130
histone modification
69
narrow histone mark
61
broad histone mark
15
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
228
August, 2021
93
February, 2021
89
February, 2023
74
August, 2017
54
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
30
March, 2020
23
February, 2020
19
April, 2020
14
May, 2023
13
July, 2019
13
November, 2017
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
May, 2021
1
April, 2019
1
August, 2022
1
January, 2018
1
November, 2019
Available data
bam
1291
bigWig
971
bed narrowPeak
619
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
815
Homo sapiens
Biosample type
816
tissue
476
primary cell
79
cell line
65
in vitro differentiated cells
6
stem cell
Organ
201
kidney
181
heart
88
bone element
76
pancreas
73
liver
53
eye
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
38
brain
38
musculature of body
20
lung
15
epithelium
8
limb
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
721
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
155
GRCh38
97
hg19
Lab
489
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_slims!
DNA sequencing
files.file_type!
bam
bed bed3
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
816 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
30
40
26
7
4
3
1
4
bone element
84
liver
20
1
23
20
1
1
1
3
left cardiac atrium
18
40
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