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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
36
ChIP-seq
5
total RNA-seq
4
WGBS
2
pCHi-C
2
single cell RNA-seq
1
RNA microarray
Assay category
38
DNA accessibility
36
DNA binding
7
Transcription
4
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
40
August, 2017
36
February, 2023
4
February, 2020
3
August, 2021
1
August, 2018
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
bam
510
bigWig
459
tsv
87
bed narrowPeak
44
fastq
35
bigBed narrowPeak
14
tagAlign
10
bed bed3+
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
87
Homo sapiens
Biosample type
87
tissue
1
in vitro differentiated cells
Organ
253
pancreas
208
kidney
207
epithelium
182
heart
93
bone element
91
connective tissue
79
liver
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
36
GRCh38
5
hg19
Lab
88
AMP-T2D consortium
assay_slims!
DNA sequencing
files.file_type!
bam
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
88 results
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ATAC-seq
ChIP-seq
total RNA-seq
WGBS
pCHi-C
single cell RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
coronary artery
35
1
adipose tissue
3
1
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
1
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in vitro differentiated cells
white fat cell
1
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