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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
66
total RNA-seq
40
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
Assay category
172
Transcription
82
DNA accessibility
40
DNA binding
3
3D chromatin structure
DNA sequencing
Target of assay
17
histone
17
histone modification
12
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
713
February, 2021
406
November, 2017
395
May, 2021
378
August, 2017
341
May, 2020
306
October, 2019
305
August, 2021
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
69
December, 2017
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
31
June, 2019
30
January, 2019
26
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
115
tsv
106
bed narrowPeak
64
xls
57
txt
41
bam
39
bigWig
24
tagAlign
bed bed3+
2
bedpe bed3+
2
hic
Organism
304
Homo sapiens
Biosample type
229
tissue
40
in vitro differentiated cells
35
cell line
1
primary cell
Organ
130
kidney
92
heart
31
liver
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
305
AMP
Genome assembly (visualization)
94
GRCh38
47
hg19
Lab
140
AMP-T2D consortium
128
Katalin Susztak, Upenn
35
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA sequencing
files.file_type!
bed bed3+
organ_slims!
embryo
BIOSAMPLE
ASSAY
305 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
osteoblast
1
cell line
HepG2
9
18
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
1
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