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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
66
ChIP-seq
6
WGBS
3
small RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
66
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
12
transcription factor
10
narrow histone mark
Date released
386
February, 2021
54
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
442
bam
425
bigWig
401
tsv
44
fastq
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
477
Homo sapiens
Biosample type
475
tissue
2
primary cell
1
in vitro differentiated cells
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
349
liver
202
heart
151
bone element
103
vasculature
101
blood vessel
93
kidney
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
478
AMP
Genome assembly (visualization)
413
GRCh38
413
hg19
Lab
478
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA sequencing
files.file_type!
bed narrowPeak
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
478 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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