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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
19
DNA binding
9
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
17
control
2
histone
2
histone modification
2
narrow histone mark
Date released
25
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
May, 2019
Available data
115
bam
93
bed narrowPeak
92
bigWig
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
40
Homo sapiens
Biosample type
40
tissue
Organ
852
pancreas
652
connective tissue
481
adipose tissue
447
epithelium
429
liver
294
heart
249
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
14
GRCh38
13
hg19
Lab
40
AMP-T2D consortium
assay_slims!
DNA sequencing
files.file_type!
bigBed narrowPeak
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
11
1
5
tibial artery
5
1
1
gastrocnemius medialis
1
4
islet of Langerhans
1
1
muscle of leg
1
1
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