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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
single cell RNA-seq
41
WGBS
40
ATAC-seq
21
snATAC-seq
18
ChIP-seq
10
total RNA-seq
6
Hi-C
5
STARR-seq
Assay category
61
DNA accessibility
61
Transcription
41
DNA methylation
18
DNA binding
6
3D chromatin structure
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
134
May, 2022
35
August, 2021
18
September, 2020
3
October, 2022
2
March, 2019
Available data
fastq
153
zippedFastqFolder
24
bigWig
16
tsv
14
bed narrowPeak
5
bedpe bed3+
5
hic
3
cool
1
bedpe
Organism
192
Homo sapiens
Biosample type
155
primary cell
33
cell line
4
tissue
Organ
87
pancreas
83
epithelium
30
liver
2
kidney
Project
155
HPAP
37
AMP
Genome assembly (visualization)
20
hg19
1
GRCh38
Lab
2749
AMP-T2D consortium
319
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
audit script error
1
inconsistent ontology term
assay_slims!
DNA sequencing
files.file_type!
fastq
BIOSAMPLE
ASSAY
192 results
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Clear Filters
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
ChIP-seq
total RNA-seq
Hi-C
STARR-seq
primary cell
Langerhans cell
51
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
cell line
HepG2
18
9
1
2
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
2
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