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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
total RNA-seq
15
ATAC-seq
3
ChIP-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
47
Transcription
17
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
53
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
13
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
October, 2017
4
August, 2021
4
June, 2019
4
March, 2019
3
August, 2018
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
37
fastq
10
bigWig
6
bam
6
tsv
3
bed narrowPeak
1
bedpe bed3+
hic
Organism
68
Homo sapiens
Biosample type
37
primary cell
26
tissue
6
cell line
Organ
69
pancreas
57
epithelium
41
heart
37
blood vessel
37
vasculature
35
artery
31
eye
16
connective tissue
8
bone element
8
skeleton
3
brain
3
musculature of body
2
adipose tissue
2
intestine
2
kidney
2
liver
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
37
HPAP
25
T1D
7
AMP
Genome assembly (visualization)
10
hg19
6
GRCh38
Lab
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
14
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_slims!
DNA sequencing
files.file_type!
hic
BIOSAMPLE
ASSAY
69 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
islet of Langerhans
7
13
2
2
pancreas
1
1
cell line
EndoC_BH1
2
2
1
1
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