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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
42
ATAC-seq
Assay category
168
DNA binding
42
DNA accessibility
Target of assay
152
histone
152
histone modification
85
broad histone mark
67
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
114
May, 2021
40
May, 2024
38
May, 2022
16
August, 2021
2
February, 2023
Available data
310
bigWig
210
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
tsv
84
tagAlign
9
txt
6
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
Organism
210
Homo sapiens
Biosample type
114
primary cell
78
tissue
14
cell line
4
in vitro differentiated cells
Organ
40
heart
34
liver
18
pancreas
2
connective tissue
Project
126
AMP
84
T1D
Genome assembly (visualization)
170
hg19
124
GRCh38
Lab
AMP-T2D consortium
132
Kyle Gaulton, UCSD
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_slims!
DNA sequencing
files.file_type!
tsv
lab.title!
AMP-T2D consortium
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
210 results
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Clear Filters
ChIP-seq
ATAC-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
30
tissue
left cardiac atrium
40
liver
20
islet of Langerhans
18
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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