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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
DNase-seq
21
ChIP-seq
Assay category
194
DNA accessibility
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
181
June, 2019
15
August, 2017
8
October, 2019
6
November, 2017
4
November, 2018
1
November, 2020
Available data
1842
bam
1704
bigWig
1048
bed narrowPeak
913
tsv
593
bigBed narrowPeak
422
fastq
238
bed broadPeak
229
bed bed3+
215
bigBed broadPeak
209
tagAlign
155
txt
73
zippedFastqFolder
64
xls
27
bed bedMethyl
27
bigBed bedMethyl
14
bedpe bed3+
14
hic
11
bed bed3
7
bed bedgraph
7
csv
3
hdf5
2
ibed
1
tagAlign bed3+
1
tar
Organism
215
Homo sapiens
Biosample type
167
tissue
47
primary cell
1
in vitro differentiated cells
Organ
78
kidney
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
215
AMP
Genome assembly (visualization)
211
GRCh38
194
hg19
Lab
215
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA sequencing
lab.title!
Kyle Gaulton, UCSD
organ_slims!
liver
pancreas
BIOSAMPLE
ASSAY
215 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 16 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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