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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
5
DNase-seq
5
total RNA-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
29
DNA binding
7
DNA accessibility
5
Transcription
2
3D chromatin structure
Target of assay
26
histone
26
histone modification
15
broad histone mark
11
narrow histone mark
3
control
Date released
98
August, 2021
98
February, 2021
80
May, 2022
74
February, 2023
61
September, 2018
57
April, 2019
51
June, 2019
43
October, 2019
40
May, 2024
36
July, 2019
33
April, 2018
33
July, 2018
29
August, 2017
29
May, 2021
26
May, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
March, 2020
7
August, 2020
6
December, 2019
6
November, 2017
6
November, 2020
5
September, 2017
3
August, 2018
3
February, 2020
3
October, 2022
2
October, 2018
1
June, 2018
Available data
39
bam
32
bigWig
26
bed narrowPeak
14
bigBed narrowPeak
5
tsv
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
43
Homo sapiens
Biosample type
33
primary cell
8
tissue
2
cell line
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
30
kidney
26
artery
eye
21
vein
18
pancreas
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
43
AMP
Genome assembly (visualization)
35
hg19
30
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA sequencing
organ_slims!
eye
BIOSAMPLE
ASSAY
43 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Liver fetal (hepatocyte)
1
tissue
heart
5
2
1
cell line
glomerular visceral epithelial cell
1
1
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