Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
102
ATAC-seq
86
RNA microarray
25
pCHi-C
22
snATAC-seq
14
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
317
DNA binding
Transcription
129
DNA accessibility
22
DNA methylation
14
3D chromatin structure
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
126
August, 2017
87
February, 2021
67
October, 2019
46
February, 2023
39
May, 2022
31
May, 2020
29
March, 2020
29
October, 2018
25
November, 2017
23
May, 2019
16
April, 2019
16
July, 2019
12
December, 2017
10
April, 2020
August, 2021
9
October, 2017
8
January, 2021
4
December, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
March, 2019
2
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
1
November, 2019
Available data
198
bam
122
tagAlign
101
bed narrowPeak
91
fastq
85
txt
60
bigWig
26
tsv
22
bed broadPeak
10
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
6
bigBed narrowPeak
5
bed bed3
1
bed bed3+
1
bedpe
Organism
598
Homo sapiens
Biosample type
600
tissue
367
primary cell
160
cell line
106
in vitro differentiated cells
5
stem cell
Organ
101
liver
98
pancreas
88
bone element
64
connective tissue
63
adipose tissue
50
brain
37
musculature of body
34
eye
26
heart
23
limb
19
blood vessel
19
vasculature
14
kidney
13
epithelium
11
lung
11
nerve
9
spleen
7
artery
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
568
AMP
22
T1D
10
LungMap
Genome assembly (visualization)
GRCh38
836
hg19
Lab
523
AMP-T2D consortium
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
86
inconsistent ontology term
4
audit script error
Audit category:
1
missing controlled_by
assay_slims!
Transcription
assay_slims!!
Transcription
assembly!
GRCh38
month_released!
August, 2021
BIOSAMPLE
ASSAY
600 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
46
46
4
7
2
1
1
4
liver
70
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
1
1
4
+ See 65 more…
See all biosamples
Download