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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
46
ATAC-seq
8
snATAC-seq
4
DNase-seq
Assay category
94
DNA binding
58
DNA accessibility
Transcription
Target of assay
56
transcription factor
21
histone
21
histone modification
15
control
14
broad histone mark
11
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
Date released
35
February, 2023
27
December, 2018
26
October, 2019
18
January, 2019
15
November, 2018
14
February, 2021
8
January, 2021
5
May, 2019
2
June, 2019
1
January, 2018
1
July, 2019
Available data
128
bed narrowPeak
108
bam
86
bigWig
79
bigBed narrowPeak
60
fastq
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
152
Homo sapiens
Biosample type
75
cell line
69
tissue
8
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
144
AMP
8
T1D
Genome assembly (visualization)
128
GRCh38
94
hg19
Lab
144
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_slims!
Transcription
assay_slims!!
Transcription
BIOSAMPLE
ASSAY
152 results
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ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
cell line
GM12878
60
1
smooth muscle cell of the coronary artery
6
8
tissue
coronary artery
5
36
2
tibial artery
23
1
2
primary cell
peripheral blood mononuclear cell
8
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