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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
ATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
66
DNA binding
36
DNA accessibility
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
63
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
1
March, 2020
Available data
102
bam
85
bigWig
84
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
108
Homo sapiens
Biosample type
108
tissue
Organ
575
liver
311
pancreas
258
brain
215
epithelium
180
heart
178
connective tissue
152
kidney
122
vasculature
116
blood vessel
107
limb
85
bone element
85
musculature of body
84
adipose tissue
68
blood
68
bodily fluid
38
artery
37
nerve
24
spleen
23
embryo
21
vein
18
ureter
14
eye
11
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
108
AMP
Genome assembly (visualization)
84
GRCh38
84
hg19
Lab
108
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
ATAC-seq
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
DNase-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
tibial artery
23
2
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
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