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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
881
ChIP-seq
ATAC-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
881
DNA binding
210
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
620
histone modification
619
histone
320
narrow histone mark
299
broad histone mark
187
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
204
October, 2019
171
August, 2017
163
June, 2019
115
May, 2019
87
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
29
March, 2020
26
November, 2018
24
July, 2019
11
October, 2017
10
April, 2020
9
August, 2021
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
4
November, 2020
2
December, 2019
2
February, 2023
1
August, 2022
1
March, 2019
1
May, 2021
1
May, 2022
1
November, 2019
Available data
895
bam
787
bigWig
772
bed narrowPeak
555
bigBed narrowPeak
234
tagAlign
219
fastq
209
bed broadPeak
191
bed bed3+
176
bigBed broadPeak
85
txt
25
bed bedMethyl
25
bigBed bedMethyl
25
tsv
11
hic
10
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
1255
Homo sapiens
Biosample type
1264
tissue
505
cell line
408
primary cell
206
in vitro differentiated cells
8
stem cell
Organ
236
brain
166
liver
165
heart
142
pancreas
109
kidney
107
limb
84
bone element
82
blood vessel
82
vasculature
74
musculature of body
72
connective tissue
71
adipose tissue
37
nerve
32
artery
24
spleen
18
ureter
11
lung
9
eye
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
1241
AMP
13
T1D
10
LungMap
Genome assembly (visualization)
758
GRCh38
690
hg19
Lab
1190
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
11
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
7
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
assay_title!
ATAC-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
1264 results
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ChIP-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
2
3
1
1
1
bone element
84
islet of Langerhans
61
1
7
4
3
1
1
4
kidney
27
13
6
1
1
1
heart left ventricle
35
3
4
1
1
1
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