Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
905
ChIP-seq
ATAC-seq
178
DNase-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
Hi-C
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
905
DNA binding
190
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
204
October, 2019
193
August, 2017
163
June, 2019
115
May, 2019
87
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
27
March, 2020
26
November, 2018
24
July, 2019
15
October, 2017
9
August, 2021
7
December, 2018
7
January, 2019
6
September, 2017
4
November, 2020
2
December, 2019
1
August, 2022
1
March, 2019
1
May, 2022
1
November, 2019
Available data
918
bam
810
bigWig
774
bed narrowPeak
558
bigBed narrowPeak
245
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
25
bed bedMethyl
25
bigBed bedMethyl
25
tsv
11
hic
10
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
1259
Homo sapiens
Biosample type
1267
tissue
511
cell line
245
primary cell
212
in vitro differentiated cells
8
stem cell
Organ
240
brain
166
liver
165
heart
140
pancreas
109
kidney
107
limb
84
bone element
84
connective tissue
83
adipose tissue
82
blood vessel
82
vasculature
74
musculature of body
37
nerve
32
artery
24
spleen
18
ureter
9
eye
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
1267
AMP
13
T1D
10
LungMap
Genome assembly (visualization)
781
GRCh38
713
hg19
Lab
1214
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
7
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
assay_title!
ATAC-seq
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
1267 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
Hi-C
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
2
3
1
1
1
bone element
84
islet of Langerhans
69
1
4
3
1
1
1
4
kidney
27
13
1
1
6
1
heart left ventricle
35
3
4
1
1
1
+ See 143 more…
See all biosamples
Download