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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
ChIP-seq
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
481
DNA binding
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
358
transcription factor
89
recombinant protein
83
control
64
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
312
November, 2017
61
November, 2018
28
December, 2018
26
August, 2021
26
October, 2019
18
January, 2019
13
November, 2019
9
February, 2021
6
February, 2023
6
November, 2020
5
March, 2020
1
May, 2020
1
May, 2021
1
October, 2022
Available data
468
bam
422
fastq
415
bigWig
394
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
5
tsv
3
bed bed3+
tar
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
511
Homo sapiens
Biosample type
1280
tissue
513
cell line
447
primary cell
207
in vitro differentiated cells
8
stem cell
Organ
382
liver
60
blood
60
bodily fluid
39
pancreas
25
epithelium
15
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
1
mammary gland
Project
506
AMP
7
T1D
Genome assembly (visualization)
408
hg19
350
GRCh38
Lab
478
AMP-T2D consortium
24
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
36
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
Transcription
assay_title!
ATAC-seq
files.file_type!
bedpe bed3+
tar
BIOSAMPLE
ASSAY
513 results
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Clear Filters
ChIP-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
whole genome sequencing assay
cell line
HepG2
375
2
2
1
1
1
GM12878
60
EndoC_BH1
15
6
3
2
2
1
Panc1
13
1
1
smooth muscle cell of the coronary artery
6
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