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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
ATAC-seq
3
DNase-seq
3
WGBS
1
RNA microarray
1
pCHi-C
Assay category
Transcription
71
DNA binding
3
DNA accessibility
3
DNA methylation
Target of assay
55
histone
55
histone modification
36
broad histone mark
19
narrow histone mark
16
control
Date released
39
August, 2017
37
October, 2019
1
August, 2021
1
June, 2019
1
March, 2020
Available data
78
bam
49
bigWig
fastq
35
bed narrowPeak
34
bigBed narrowPeak
8
bed bed3+
8
tagAlign
5
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
tsv
Organism
78
Homo sapiens
Biosample type
79
tissue
Organ
238
brain
180
heart
154
kidney
153
pancreas
142
epithelium
117
vasculature
116
liver
114
blood vessel
107
limb
85
bone element
84
musculature of body
82
connective tissue
42
adipose tissue
38
artery
37
nerve
22
vein
18
ureter
14
eye
11
lung
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
28
hg19
27
GRCh38
Lab
79
AMP-T2D consortium
assay_slims!
Transcription
assay_title!
ATAC-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
DNase-seq
WGBS
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
tibial nerve
35
2
adipose tissue
1
omental fat pad
1
subcutaneous adipose tissue
1
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