Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
352
ChIP-seq
5
DNase-seq
ATAC-seq
Assay category
352
DNA binding
5
DNA accessibility
Target of assay
314
transcription factor
81
recombinant protein
55
RNA binding protein
35
histone
35
histone modification
23
chromatin remodeller
21
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
5
August, 2017
2
June, 2019
Available data
516
bam
459
fastq
439
bigWig
418
bed narrowPeak
357
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
hdf5
1
vcf
Organism
357
Homo sapiens
Biosample type
293
cell line
48
tissue
14
in vitro differentiated cells
2
primary cell
Organ
357
liver
127
brain
104
kidney
94
heart
84
limb
83
vasculature
79
blood vessel
69
pancreas
54
blood
54
bodily fluid
54
epithelium
47
musculature of body
26
nerve
25
artery
24
connective tissue
18
ureter
13
spleen
13
vein
8
adipose tissue
6
eye
Project
357
AMP
Genome assembly (visualization)
353
hg19
325
GRCh38
Lab
357
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
assay_title!
ATAC-seq
organ_slims!
lymph node
BIOSAMPLE
ASSAY
357 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2
293
tissue
liver
38
2
right lobe of liver
7
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
Download