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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
41
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
24
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
November, 2018
Available data
41
fastq
40
bam
21
bigWig
7
bed narrowPeak
7
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
1
tsv
Organism
51
Homo sapiens
Biosample type
51
tissue
1
in vitro differentiated cells
Organ
473
liver
164
pancreas
127
epithelium
124
kidney
100
connective tissue
85
bone element
83
heart
71
brain
67
blood
67
bodily fluid
58
limb
53
musculature of body
52
adipose tissue
52
vasculature
47
blood vessel
18
artery
18
spleen
18
ureter
13
nerve
11
eye
11
lung
8
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
21
GRCh38
19
hg19
Lab
52
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
Transcription
assay_title!
ATAC-seq
month_released!
February, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
omental fat pad
11
2
subcutaneous adipose tissue
12
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
adipose tissue
1
3
1
in vitro differentiated cells
white fat cell
1
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