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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ATAC-seq
5
ChIP-seq
4
Hi-C
3
pCHi-C
Assay category
Transcription
10
DNA accessibility
5
DNA binding
4
3D chromatin structure
Target of assay
3
transcription factor
2
control
2
histone
2
histone modification
narrow histone mark
Date released
5
March, 2020
5
November, 2019
4
October, 2019
3
February, 2023
3
May, 2021
2
December, 2017
Available data
12
bam
11
bed narrowPeak
6
bedpe bed3+
4
bigWig
4
hic
3
tagAlign
2
bed bed3+
2
fastq
2
ibed
1
bed bedgraph
1
tsv
1
txt
Organism
22
Homo sapiens
Biosample type
88
tissue
50
cell line
34
primary cell
22
in vitro differentiated cells
1
stem cell
Organ
2
connective tissue
2
embryo
2
epithelium
Project
22
AMP
Genome assembly (visualization)
19
hg19
10
GRCh38
Lab
21
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
assay_slims!
Transcription
assay_title!
CRISPR RNA-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
22 results
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ATAC-seq
ChIP-seq
Hi-C
pCHi-C
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
1
2
2
cardiomyocytes
3
Hepatic endoderm
2
cardiac precursors (cardiac muscle cell)
1
1
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