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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
29
ChIP-seq
6
Hi-C
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
34
DNA accessibility
29
DNA binding
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
26
August, 2017
7
May, 2019
5
July, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
53
bigWig
51
bed narrowPeak
45
bed broadPeak
40
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
75
Homo sapiens
Biosample type
75
tissue
primary cell
Organ
589
liver
276
pancreas
244
brain
218
heart
199
kidney
179
connective tissue
134
blood vessel
134
vasculature
115
limb
96
bone element
90
adipose tissue
83
artery
80
epithelium
75
musculature of body
61
blood
61
bodily fluid
38
nerve
37
eye
25
spleen
23
embryo
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
57
hg19
38
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
CRISPR genome editing followed by DNA sequencing
biosample_type!
primary cell
BIOSAMPLE
ASSAY
75 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
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