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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
6
MeRIP-seq
5
STARR-seq
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
7
control
3
histone
3
histone modification
3
nucleotide modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
25
August, 2021
6
November, 2020
2
February, 2023
Available data
14
bed narrowPeak
14
bigWig
1
bedpe bed3+
1
hic
1
vcf
Organism
33
Homo sapiens
Biosample type
289
primary cell
201
tissue
49
in vitro differentiated cells
33
cell line
Organ
22
liver
6
epithelium
6
pancreas
2
kidney
Project
31
AMP
2
T1D
Genome assembly (visualization)
15
hg19
Lab
AMP-T2D consortium
25
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
assay_slims!
Transcription
assay_title!
CRISPR genome editing followed by DNA sequencing
lab.title!
AMP-T2D consortium
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
MeRIP-seq
STARR-seq
HiChIP
Hi-C
whole genome sequencing assay
cell line
HepG2
18
2
1
1
EndoC_BH1
6
2
HEK293T
2
Synthesized DNA
1
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