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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
3
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
Transcription
18
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
16
August, 2017
5
October, 2018
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
25
bam
24
bigWig
23
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
25
Homo sapiens
Biosample type
25
tissue
Organ
369
liver
229
pancreas
205
brain
196
heart
193
kidney
148
epithelium
133
vasculature
129
blood vessel
92
limb
91
connective tissue
74
artery
54
blood
54
bodily fluid
47
musculature of body
27
nerve
25
adipose tissue
18
ureter
16
spleen
15
embryo
12
vein
8
bone element
8
skeleton
6
eye
1
pituitary gland
Project
25
AMP
Genome assembly (visualization)
27
hg19
25
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
assay_title!
CRISPRi RNA-seq
month_released!
August, 2018
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
white adipose tissue
12
omental fat pad
3
1
2
adipose tissue
1
2
subcutaneous adipose tissue
2
1
adipose tissue(adipose white tissue)
1
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