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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
60
ChIP-seq
13
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
Transcription
60
DNA binding
21
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
4
February, 2023
1
January, 2018
1
May, 2021
Available data
84
txt
68
bam
62
bed narrowPeak
60
fastq
55
bigWig
54
bigBed narrowPeak
4
bed bed3
Organism
166
Homo sapiens
Biosample type
96
tissue
61
cell line
9
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
157
AMP
9
T1D
Genome assembly (visualization)
67
hg19
62
GRCh38
Lab
157
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
assay_slims!
Transcription
assay_title!
CRISPRi RNA-seq
award.project!
LungMap
BIOSAMPLE
ASSAY
166 results
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RNA microarray
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 8 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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