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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
93
DNA accessibility
Transcription
Date released
406
November, 2017
278
October, 2019
254
August, 2017
218
June, 2019
169
May, 2021
151
May, 2020
148
February, 2021
140
May, 2022
120
May, 2019
102
August, 2021
99
February, 2023
87
November, 2018
80
April, 2019
74
October, 2018
51
December, 2017
46
September, 2018
43
July, 2019
43
March, 2020
40
May, 2024
36
November, 2019
35
December, 2018
25
January, 2019
23
October, 2017
16
January, 2021
11
May, 2023
11
September, 2017
10
April, 2020
7
August, 2020
5
March, 2019
4
January, 2018
4
October, 2022
3
September, 2020
2
December, 2019
2
November, 2020
1
August, 2022
1
March, 2023
Available data
63
bed narrowPeak
12
tsv
5
bed bed3
Organism
98
Homo sapiens
Biosample type
81
tissue
in vitro differentiated cells
12
primary cell
6
cell line
Organ
35
artery
35
blood vessel
35
heart
35
vasculature
27
eye
14
pancreas
13
epithelium
4
bone element
4
skeleton
1
adipose tissue
1
brain
1
connective tissue
Project
81
AMP
18
T1D
Genome assembly (visualization)
35
GRCh38
33
hg19
Lab
81
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
assay_slims!
Transcription
assay_title!
Capture-C
biosample_type!
in vitro differentiated cells
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
99 results
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ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
coronary artery
35
retina
15
islet of Langerhans
11
2
pigmented layer of retina
12
acetabular part of hip bone
1
+ See 5 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
EndoC_BH1
3
2
1
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